PROGRAM

2006 WSEAS International Conference on

MATHEMATICAL BIOLOGY and ECOLOGY

(MABE ‘06)

 

 

Miami, Florida, USA, January 18-20, 2006

 

 

Wednesday, January 18, 2006

 

 

Plenary Lecture 1

 

Title: Control of Chemical Spills by Boundary Suction

 

Professor Nikolaos D. Katopodes

Department of Civil and Environmental Engineering

University of Michigan

Ann Arbor, MI 48109

USA

 

Abstract: A method is presented for the control of chemical spills. The approach is based on real-time information provided by microsensors capable of monitoring instantaneous changes in the concentration of a chemical in solution or suspension. The method also utilizes current flow and transport data provided by a simulation model. Once a chemical cloud requiring control action is detected by the sensors, the model provides optimal directions to pre-installed boundary actuators capable of modifying the flow conditions in the system. The technique requires assimilation of data from the sensors to steer the model so the error between its current state and sensor measurements is minimized. The model also performs prediction simulations to determine the optimum set of actuator commands necessary to control the chemical plumes. Results of model control applications are shown to be capable of removing a chemical cloud from a flow through channel.

 

 

Plenary Lecture 2

 

Title: Functional and physical extrapolation relative to evolution of the mammalian erythrocyte

 

Professor Charles A. Long

Department of Biology

University of Wisconsin

Stevens Point, Wisconsin

54481 U.S.A.

 

Abstract: The erythrocyte in mammals follows the phylogeny of early lungfish, amphibian, mammal-like reptile line.  Although birds are similarly warm blooded and metabolically active, and the reptiles are considered ancestral to the mammalian grade, macroevolutionary specialization of a mammal erythrocyte without marginal microtubule bands, biconcave form, and lacking nucleus and other organelles shows no affinity to extant vertebrate groups.  The erythrocyte following loss of the marginal bands and nucleus attains a high concentration of Hb, and “kiting” biconcave shape with high surface to volume and low inertia, but deforms flexibly to enter tight confines.  It regains its form even though the endoplasm is purely viscous, by means of tensile elasticity of the cytoskeleton, probably by surface tension and pressure, and has minimal energy costs in bending and minimal “wear and tear” for the life of the cell.

 

 

Plenary Lecture 3

 

Title: MULTI-DISCIPLINARY RESEARCH ACTIVITIES: Mathematics/ High Performance Computing / Biology / Fluid Mechanics / Structural /
Acoustics Applications

 

Professor Duc Nguyen

Civil & Environmental Engineering Department

Old Dominion University

1319 ECSB

Norfolk, VA 23529

(USA)

 

Abstract: Fundamental and numerical intensive equations arise naturally from Computation Fluid Dynamics (CFD), Molecular Biology, Structural Analysis, Design Sensitivity Analysis (DSA), Optimal Design, Aerospace/Automobile Design, Mathematics, Operation Research, Ground Water Flows, Electromagnetics, Acoustics etc... are identified.

Effective numerical algorithms to solve such (large-scale) numerical intensive equations have recently been developed. The developed algorithms take full advantages of parallel and/or vector/cache capabilities provided by high-performance computing (HPC) platforms, such as SUN-10000, SGI etc...

Based upon the developed numerical algorithms (for solving systems of SPARSE, linear/nonlinear, symmetric/unsymmetric, positive/negative/INDEFINITE matrix genvalue equations, linear/nonlinear constrained/unconstrained optimization, design sensitivity analysis, 2-nd order P.D.E.), several major (numerical intensive) subroutines have been coded and tested in a parallel and/or vector/ cache computer environments.

Practical NASA engineering problems, such as stress analysis of the Solid Rocket Booster (SRB), High Speed Civil Transport (HSCT) aircraft, NASA LaRC Acoustic, automobile models etc... have been solved  to evaluate the performance of the developed algorithms. For example, using our developed SPARSE L*D*L solver, a 250,000 degree-of-freedom (or equations) automobile finite element model can be solved on a "single" Cray-C90 processor in 81 seconds (including approx. 40 seconds re-ordering time, and 41 seconds factorization time).

Fast equation & eigen-solutions for the 640,332 degree-of-freedom (equations) for the NASTRAN structural model have also been obtained on inexpensive/"old" Sun/Ultra 1) workstation in approx. 20 minutes. For this model, the number of non-zero coefficient matrix before & after factorization are 14,790,661 and 88,563,006, respectively. Solutions for 1-6 million unknowns (complex numbers, unsymmetrical systems of linear equations) for acoustics finite element models have recently been solved in inexpensive HPC clusters.

Finally, discussion will be focused on the needs and benefits by incorporating state-of-the-art solvers (in-core and out-of-core parallel-vector equation DENSE solvers),parallel-vector TRI-DIAGONAL (to solve system of 38.4 "million" equations on the "OLD" 128 Intel IPSC/860 "Gamma" processors, in LESS THAN 1 second), eigen solvers, Computational Fluids Dynamics (CFD), etc... into general finite element engineering application codes, within the framework of sub-domains formulation. Large-scale computation for molecular biology in parallel computer environments is also reported.

 

 

Plenary Lecture 4

 

Title: Challenges in Real-Time and Individualized Patient Monitoring, Diagnosis and Decision Assistance: New Paradigms of System Identification

 

Professor Le Yi Wang

Wayne State University

Department of Electrical and Computer Engineering

5050 Anthony Wayne Dr.

Detroit, MI 48202

U.S.A.

 

Abstract: Real-time patient monitoring and medical decisions are broadly exemplified by respiratory function monitoring for asthma patient, vital sign monitoring of soldiers in battlefields, anesthesia drug infusion control, fluid resuscitation strategies, pain management, sedation control in intensive care units, automated drug rates for diabetics, etc.  The characteristics of patient responses to treatment and drugs in these problems demonstrate significant nonlinearity and time variation, and  depend critically on patient medical conditions, surgical procedures, and drug interactions; and hence they are not repeatable. Diagnosis, control and decision assistance in such problems demand individualized and real-time patient models, rendering a central role of system identification in these medical applications. When integrated with internet or wireless networks for telemedicine, these real-time information processing problems are further constrained by data power limitation, noise corruption, and data transmission speed.

In this talk, several new paradigms of system identification will be summarized, beyond traditional identification problems. These will include nonlinear patient models for anesthesia control, reconfigured channel identification for signal separation, and integrated identification and communications in telemedicine. Recent advances in these areas will be presented.

 

 

Plenary Lecture 5

 

Title: Advanced Computational Methods in Bio-imaging and Bio-data Analysis

 

Assc. Professor Tuan Pham

Bioinformatics Applications Research Centre

School of Information Technology

James Cook University

Townsville, QLD 4811

AUSTRALIA

 

Abstract: Computational methodology and approaches play a key role in computational life sciences including bioinformatics, computational biology, and biomedical informatics.  Some current important research areas of computational life sciences are automated image analysis and identification of cell phases with microscopic time-lapsed imaging sequences, neuronal imaging, classification of genomic and protein sequences, and analysis of gene expression microarray data.  In this talk, I will present several recently developed novel computational methods for solving such described problems, and suggest other computational issues and directions for future research in computational life sciences.

 

 

 

2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: BIODIVERSITY, ECOLOGY AND ENVIRONMENT

 

Chair: Prof. Jurij Krope

 

Temperature based model to forecasting attack time of the sunn pest Eurygaster integriceps put. in wheat field of Iran

Bahram Tafaghodinia, Moslem Majdabadi

509-136

Processes Innovation- A Step to Environment Protection

Davorin Kralj, Uros Ogrin, Jurij Krope

509-140

Environment Management and its Environmental Policy

Davorin Kralj, Lilijana Eisner, Darko Goricanec

509-141

Safety Management System- A Part of  Environment Protection

Lilijan Eisner, Klavdij Kovacic, Davorin Kralj

509-145

Health Service and Environment Management System

Davorin Kralj,  Marko Stamenkovic

509-153

 

 


 

Thursday, January 19, 2006

 

 


2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: DYNAMICS AND MODELLING IN BIOLOGY

 

Chair: Prof. Mohammed Yeasin

 

A molecular dynamics investigation of the kinetic bottlenecks of the hPin1 WW domain. I: simulations with the Sorenson/Head-Gordon model

Fabio Cecconi, Carlo Guardiani, Roberto Livi

509-102

A molecular dynamics investigation of the kinetic bottlenecks of the hPin1 WW domain. II: simulations with the Go model

Fabio Cecconi, Carlo Guardiani, Roberto Livi

509-103

Schistosomiasis propagation in a circular habitat with endemic boubdary

Juan Ospina, Doracelly Hincapié

509-115

Dengue disease model with the effect of extrinsic incubation period

Puntani Pongsumpun

509-138

Mathematical model for asymptomatic and symptomatic infections of dengue disease

Puntani Pongsumpun, Decha Samana

509-139

A General Model for Gene Regulatory Networks with Stochastic Dynamics

Andre S. Ribeiro, Rui Zhu, Stuart A. Kauffman

509-143

Dynamic modeling of the efficiency in a uasb reactor for milk wastewater treatment

Elli Maria Barampouti, Sofia Mai, Apostolos Vlyssides

509-172




2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: BIOINFORMATICS AND BIOENGINEERING I

 

Chair: Prof. Mohammed Yeasin

 

Separation of Lung and Heart Sounds for Anesthesia Diagnosis

Hong Wang, Han Zheng, Le Yi Wang, Howard J. Normile, Jeremy Nofs

509-109

A Nano-rotor driven by the electrorotation effect acting on a cylindrical bioparticle

Rafael Duran, Araceli Ramirez, Alfred Zehe

506-171

Mathematical Models and Enigmas in Evolution of Erythrocytes

Charles A. Long

509-112

A highly efficient and accurate algorithm for solving the partial differential equation in Cardiac Tissue Models

Jichao Zhao, Yinbin Jin, Li Ma, Robert M. Corless

509-120

3D Face Recognition in Biometrics

Chao Li, Armando Barreto

509-123

L-system tree model and LIDAR simulator: estimation of spray target area.

A M Farquis, V. Méndez, P J Walklate, M. T. Castellanos, M. C. Morató

509-124

Segmentation of Echocardiogram Image Sequence with Scale-Rate as the Measurement of Local Signal Complexity

X. Zhuang, N. E. Mastorakis

509-091

Study of a Mixed Learning Technology Approach for Distance Health & Biomedical Informatics Education: The V-Trainer Pro System

Athina Lazakidou, Andriani Daskalaki, Konstantinos Siassiakos

509-096

 

 

 

 

Friday, January 20, 2006

 

 

 

2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: MATHEMATICS AND STATISTICAL METHODS IN BIOLOGY I

 

Chair: Prof. A. Tsoularis

 

A combined Markov and noise clustering modeling method for cell phase classification

Dat D. Tran, Tuan D. Pham

509-169

Comparison of Genomes As 2-Level Pattern Analysis

Girish Rao, David K.Y. Chiu

509-160

A machine learning approach for predicting kinetic order and rate constant of protein folding

Emidio Capriotti, Rita Casadio

509-135

Exploring Malaria Developmental Expression Profiles Using Wavelet Analysis and Support Vector Machine

Hong Cai, Sos S. Agaian, Maribel Sanchez, Yufeng Wang

509-132

The Role of Retinoic Acid and Notch in the Symmetry Breaking Instabilities for Axon Formation

Majid Bani-yaghoub  David E. Amundsen

509-126

Raking and Selection of Differentially Expressed Genes from Microarray Data

Jahangheer Shaik, Mohammed Yeasin

509-121




2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: RNA/DNA STRUCTURE AND SEQUENCE ANALYSIS

 

Chair: Prof. T. Pham

 

Comparing DNA Sequences By Dynamic Programming In Sequential and Parallel Computer Environment

Eric Nguyen, Don Nguyen, Duc Nguyen, Siroj Tungkahotara

509-119

The Enumeration of Various Types of Constrained Secondary Structure

Wenwen Wang, Tianming Wang, Yanchun Yang

509-118

A method to find protein coding genes in the yeast genome based on a 3D graphical representation of DNA sequence

Chun-xin Yuan, Chun Li, Da-chao Li

509-117

Comparing RNA Molecules Based on Their Secondary Structures

Na Liu, Tianming Wang

509-116




2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: BIOINFORMATICS AND BIOENGINEERING II

 

Chair: Prof. Mohammed Yeasin

 

New Recurrent Neural Architectures

Massimo Buscema, Marco Breda, Stefano Terzi

509-154

Ion Trapping and Release Using Computational Electronics Methods

Sai Hu, Karl Hess

509-146

Ion Distribution and Permeation Study of Biological Ion Channel Using PNP/ECP Model

Zhicheng Yang,  Umberto Ravaioli

509-130

Rapid Prototyping of an FPGA based sensor system for Biomedical Monitoring

Kimberly Newman, Nathan Laramie, Casey Medina

509-128

Electromyograms as Physiological Inputs that Provide Efficient Computer Cursor Control

Craig Chin, Armando Barreto

509-127




2006 WSEAS International Conference on Mathematical Biology and Ecology

 

SESSION: MATHEMATICS AND STATISTICAL METHODS IN BIOLOGY

 

Chair: Prof. W. J. Malaisse

 

The Statistical Analysis Of Longitudinal Clonal Data On Oligodendrocytes Generation

Ollivier Hyrien, Margot Mayer-Proschel, Mark Noble, Andrei Yakovlev

509-113

Assessment of inflow rate, fractional outflow rate and steady-state cellular pool of ions bases on two measurements of radioactive tracer net uptake

Willy J. Malaisse

509-108

New Approach to Nonparametric Statistical Analysis of FMRI Signals

Patrick de Maziere, Marc van Hulle

509-111

Learning strategies for a predator

operating in model-mimic-alterantive prey environments

Anastasios  Tsoularis

509-104